Research Output

VP1

Macedo, D.H., Grybchuk, D., Režnarová, J., Votýpka, J., Klocek, D., Yurchenko, T., Ševčík, J., Magri, A., Urda Dolinská, M., Záhonová, K., Lukeš, J., Servienė, E., Jászayová, A., Serva, S., Malysheva, M.N., Frolov, A.O., Yurchenko, V., Kostygov, A.Y. (2023). Diversity of RNA viruses in the cosmopolitan monoxenous trypanosomatid Leptomonas pyrrhocoris. BMC Biology, 21(1), 191. https://doi.org/10.1186/s12915-023-01687-y

Albanaz, A.T.S., Carrington, M., Frolov, A.O., Ganyukova, A.I., Gerasimov, E.S., Kostygov, A.Y., Lukeš, J., Malysheva, M.N., Votýpka, J., Zakharova, A., Záhonová, K., Zimmer, S.L., Yurchenko, V., Butenko, A. (2023). Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae. BMC Genomics, 24, 471. https://doi.org/10.1186/s12864-023-09591-z

Kostygov, A.Y., Albanaz, A.T.S., Butenko, A., Gerasimov, E.S., Lukeš, J., Yurchenko, V. (2024). Phylogenetic framework to explore trait evolution in Trypanosomatidae. Trends in Parasitology, 40(2), 96-99. https://doi.org/10.1016/j.pt.2023.11.009

Opperdoes, F.R., Záhonová, K., Škodová-Sveráková, I., Bučková, B., Chmelová, L′., Lukeš, J., Yurchenko, V. (2024) In silico prediction of the metabolism of Blastocrithidia nonstop, a trypanosomatid with non-canonical genetic code. BMC Genomics, 25(1), 184. https://doi.org/10.1186/s12864-024-10094-8

Chmelová, L'., Záhonová, K., Albanaz, A.T.S., Hrebenyk, L., Horváth, A., Yurchenko, V., Škodová-Sveráková, I. Distribution and functional analysis of isocitrate dehydrogenases across kinetoplastids. Genome Biology and Evolution, 16(3), evae042. https://doi.org/10.1093/gbe/evae042

Usarov, G.X., Turitsin, V.S., Sattarova, X.G., Sádlová, J., ugli Mustanov, J.A., Saura, A., Yurchenko, V. (2024). Phlebotomine sand fly (Diptera: Phlebotominae) diversity in the foci of cutaneous leishmaniasis in the Surxondaryo Region of Uzbekistan: 50 years on. Parasitology Research, 123, 179. https://doi.org/10.1007/s00436-024-08191-4

Rogozin, I.B., Saura, A., Poliakov, E., Bykova, A., Roche-Lima, A., Pavlov, Y.I., Yurchenko, V. (2024). Properties and mechanisms of deletions, insertions, and substitutions in the evolutionary history of SARS-CoV-2. International Journal of Molecular Sciences, 25, 3696. https://doi.org/10.3390/ijms25073696

Bartas, M., Červeň, J., Valková, N., Volná, A., Dobrovolná, M., Šislerová, L., Baldvinsson, H., Pečinka, P., Brázda, V. (2023). RNA analysis of the longest living vertebrate Greenland shark revealed an abundance of LINE-like elements in its transcriptome. Czech Polar Reports, 13(2), 210-227. https://doi.org/10.5817/CPR2023-2-17

VP2

Dukić, M., Sredojević, D., Férová, M., Slovak, V., Lončarević, D., Dostanić, J., ... & Nedeljković, J. M. (2024). Interfacial charge transfer complexes between ZnO and benzene derivatives: Characterization and photocatalytic hydrogen production. International Journal of Hydrogen Energy, 62, 628-636. https://doi.org/10.1016/j.ijhydene.2024.03.075

Böde, K., Javornik, U., Dlouhý, O., Zsíros, O., Biswas, A., Domonkos, I., Šket, P., Karlický, V., Plavec, J., Ughy, B., Lambrev, P.H., Špunda, V., & Garab, G. (2024). Role of isotropic lipid phase in the fusion of photosystem II membranes. Photosynthesis Research, 1-14. https://doi.org/10.1007/s11120-024-01097-3

VP3

Novotný, M., Dubecký, M., & Karlický, F. (2024). Toward accurate modeling of structure and energetics of bulk hexagonal boron nitride. Journal of Computational Chemistry, 45(2), 115-121. https://doi.org/10.1002/jcc.27222

Šulka, M., Šulková, K., Jurečka, P., & Dubecký, M. (2023). Dynamic and Nondynamic Electron Correlation Energy Decomposition Based on the Node of the Hartree–Fock Slater Determinant. Journal of Chemical Theory and Computation, 19(22), 8147-8155. https://doi.org/10.1021/acs.jctc.3c00828

Vénosová, B., & Karlický, F. (2023). Modeling size and edge functionalization of MXene-based quantum dots and their effect on electronic and magnetic properties. Nanoscale Advances, 5(24), 7067-7076. https://doi.org/10.1039/d3na00474k

VP4

Jandacka, D., Casula, V., Hamill, J., Vilímek, D., Jandackova, V. K., Elavsky, S., ... & Nieminen, M. T. (2024). Regular Running Is Related to the Knee Joint Cartilage Structure in Healthy Adults. Medicine and Science in Sports and Exercise.https://DOI.org/10.1249/MSS.0000000000003386

VP6

Venglar, O., Kapustova, V., Anilkumar Sithara, A., Zihala, D., Muronova, L., Sevcikova, T., ... & Jelinek, T. (2023). Insight into the mechanism of CD34+ cell mobilisation impairment in multiple myeloma patients treated with anti‐CD38 therapy. British Journal of Haematology. https://doi.org/10.1111/bjh.19141 Epub ahead of print. PMID: 37807708.

Jelinek, T., Zihala, D., Sevcikova, T., Anilkumar Sithara, A., Kapustova, V., Sahinbegovic, H., ... & Hajek, R. (2024). Beyond the marrow: insights from comprehensive next-generation sequencing of extramedullary multiple myeloma tumors. Leukemia, 1-11. doi: 10.1038/s41375-024-02206-w. Epub ahead of print. PMID: 38493239.

VP7

Hurník, P., Režnarová, J., Chyra, Z., Motyka, O., Putnová, B. M., Čermáková, Z., ... & Štembírek, J. (2023). Enhancing oral squamous cell carcinoma prediction: the prognostic power of the worst pattern of invasion and the limited impact of molecular resection margins. Frontiers in Oncology, 13. https://doi.org/10.3389/fonc.2023.1287650

VP9

Kijonka, J., Vavra, P., Penhaker M., & Kubicek J. (2024). Representative QRS loop of the VCG record evaluation. Frontiers in Physiology, 14, 1260074. https://doi.org/10.3389/fphys.2023.1260074

Vondrak, J., Penhaker, M., & Kubicek, J. (2024). Detection of myocardial infarction using analysis of vectorcardiographic loops. Measurement, 226, 114094. https://doi.org/10.1016/j.measurement.2023.114094

Kijonka, J., Vavra, P., Penhaker, M., Bibbo, D., Kudrna, P., & Kubíček, J. (2023). Present results and methods of vectorcardiographic diagnostics of ischemic heart disease. Computers in Biology and Medicine, 107781. https://doi.org/10.1016/j.compbiomed.2023.107781

VP1

Afonin, D.A., Gerasimov, E.S., Škodová-Sveráková, I., Záhonová, K., Gahura, O., Albanaz, A.T.S., Myšková, E., Bykova, A., Paris, Z., Lukeš, J., Opperdoes, F.R., Horváth, A., Zimmer, S.L., Yurchenko, V. (2024) Blastocrithidia nonstop mitochondrial genome and its expression are remarkably insulated from nuclear codon reassignment. Nucleic Acids Research, 52, 3870-3885. https://doi.org/10.1093/nar/gkae168

Zavataro, A.L.E., Skýpalová, K., Vergara, P.O.T., Silva, F.M, Butenko, A., Yurchenko, V., Kostygov, A.Y., Alves, J.M.P. (2024) The genome of the endosymbiont-harboring trypanosomatid Kentomonas sorsogonicus. Protistology, 18(1), 72-81. https://doi.org/10.21685/1680-0826-2024-18-1-7

Makki, A., Kereïche, S., Le, T., Kučerová, J., Rada, P., Žárský, V., Hrdý, I., Tachezy, J. (2024) A hybrid TIM complex mediates protein import into hydrogenosomes of Trichomonas vaginalis. BMC Biology 22, 130. https://doi.org/10.1186/s12915-024-01928-8.

Grybchuk, D., Galan, A., Klocek, D., Macedo, D.H., Wolf, Y.I., Votýpka, J., Butenko, A., Lukeš, J., Neri, U., Záhonová, K., Kostygov, A.Y., Koonin, E.V., Yurchenko, V. (2024) Identification of diverse RNA viruses in Obscuromonas flagellates (Euglenozoa: Trypanosomatidae: Blastocrithidiinae). Virus Evolution 10, veae037. https://doi.org/10.1093/ve/veae037

Chmelová, Ľ., Kraeva, N., Saura, A., Krayzel, A., Vieira, C.S., Ferreira, T.N., Soares, R.P., Bučková, B., Galan, A., Horáková, E., Vojtková, B., Sádlová, J., Malysheva, M.N., Butenko, A., Prokopchuk, G., Frolov, A.O., Lukeš, J., Horváth, A., Škodová-Sveráková, I., Feder, D., Kostygov, A.Y., Yurchenko, V. (2024) Intricate balance of dually-localized catalase modulates infectivity of Leptomonas seymouri (Kinetoplastea: Trypanosomatidae). International Journal for Parasitology 54, 391-400. https://doi.org/10.1016/j.ijpara.2024.04.007

Williams, M. P., Flegontov, P., Maier, R., & Huber, C. D. (2024) Testing times: disentangling admixture histories in recent and complex demographies using ancient DNA. Genetics 228, iyae110. https://doi.org/10.1093/genetics/iyae110

Bartas, M., Brázda, V., & Pečinka, P. (2024) Special Issue "Bioinformatics of Unusual DNA and RNA Structures". International Journal of Molecular Sciences 25, 5226. https://doi.org/10.3390/ijms25105226

Bartas M. (2024) Abiotic Stresses in Plants: From Molecules to Environment. International Journal of Molecular Sciences 25, 8072. https://doi.org/10.3390/ijms25158072

Zavataro, A.L.E., Skýpalová, K., Vergara, P.O.T., Silva, F.M, Butenko, A., Yurchenko, V., Kostygov, A.Y., Alves, J.M.P. (2024) The genome of the endosymbiont-harboring trypanosomatid Kentomonas sorsogonicus. Protistology, 18(1), 72-81. https://doi.org/10.21685/1680-0826-2024-18-1-7

VP2

Garab, G. (2024). Revisiting the nonregulatory, constitutive nonphotochemical quenching of the absorbed light energy in oxygenic photosynthetic organisms. Photosynthetica, 62(2), 204-208. https://doi.org/10.32615/ps.2024.022

Pech, R., Nezval, J., Volná, A., & Špunda, V. Blue Light as an Important Factor Increasing Plant Tolerance to Acute Photooxidative Stress. Available at SSRN 4856446. Environmental and Experimental Botany, 226, 105923. https://doi.org/10.1016/j.envexpbot.2024.105923

Férová, M. a Kalina, J. Biosynthesis of Silver Nanoparticles from Reynoutria bohemica by Hot and Cold Route. WASTE AND BIOMASS VALORIZATION. 2024, č. July 2024, ISSN 1877-2641. https://link.springer.com/article/10.1007/s12649-024-02656-4

T. Zelenka, L. Zelená, C. Abreu-Jaureguí, J. Silvestre-Albero, G. Zelenková, V. Slovák, On the Low-Pressure Hysteresis (LPH) in Gas Sorption Isotherms of Porous Carbons. Small 2024, 2311990. https://doi.org/10.1002/smll.202311990

Lazic, V., Sredojevic, D., Ciric, A., Nedeljkovic, J. M., Zelenková, G., Férová, M., Zelenka, T., Chavhan, M. P. a Slovák, V. The photocatalytic ability of visible-light-responsive interfacial charge transfer complex between TiO2 and Tiron. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY A-CHEMISTRY. 2024, 449(April 2024), ISSN 1010-6030. https://doi.org/10.1016/j.jphotochem.2023.115394

Volná, A., Červeň, J., Nezval, J., Pech, R., & Špunda, V. (2024). Bridging the Gap: From Photoperception to the Transcription Control of Genes Related to the Production of Phenolic Compounds. International Journal of Molecular Sciences, 25(13), 7066. https://doi.org/10.3390/ijms25137066

VP3

Sakhraoui, T., & Karlický, F. (2024). Prediction of induced magnetism in 2D Ti2C based MXenes by manipulating the mixed surface functionalization and metal substitution computed by xTB model Hamiltonian of the DFTB method. Physical Chemistry Chemical Physics, 26, 12862-12868. https://doi.org/10.1039/d3cp05665a

Saraswat, R., Kolos, M., Verma, R., Karlický, F., & Bhattacharya, S. (2024). Phonon assisted exciton processes in two-dimensional tungsten monocarbide. The Journal of Physical Chemistry C, 128(20), 8341-8350. https://doi.org/10.1021/acs.jpcc.4c02062

Kalmár, J., & Karlický, F. (2024). Strain-Induced Changes of Electronic and Optical Properties of Zr-based MXenes. Journal of Applied Physics, 135, 244302. https://doi.org/10.1063/5.0205991

Šulka M., Šulková K., & Dubecký M. (2024). Unveiling Hidden Dynamic Correlations in CASSCF Correlation Energies by Hartree-Fock Nodes. The Journal of Chemical Physics, 161(11), 114112. https://doi.org/10.1063/5.0223733

Vénosová, B., & Karlický, F. (2024). MXene’s surface functionalization patterns and their impacts on magnetism. Physical Chemistry Chemical Physics, 26, 18500-18509. https://doi.org/10.1039/D4CP01319K

VP4

Cipryan, L., Litschmannova, M., Barot, T., Dostal, T., Sindler, D., Kutac, P., Jandacka, D. & Hofmann, P. (2024). Air pollution, cardiorespiratory fitness and biomarkers of oxidative status and inflammation in the 4HAIE study. Scientific Reports, 14(1), 9620. https://doi.org/10.1038/s41598-024-60388-w

Krajcigr, M., Kutáč, P., Elavsky, S., Jandačka, D., & Zimmermann, M. (2024). Comparison of bone mineral density of runners with inactive males: A cross-sectional 4HAIE study. Plos one, 19(8), e0306715. DOI: https://doi.org/10.1371/journal.pone.0306715 https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0306715

Slovák, L., Panfilov, E., Zahradník, D., Casula, V., Nieminen, M. T., Land, W. M., ... & Abdollahipour, R. (2024). External Focus of Attention Reduces Cartilage Load During Drop Landings. Scandinavian journal of medicine & science in sports, 34(9), e14718. DOI: 10.1111/sms.14718 https://pubmed.ncbi.nlm.nih.gov/39215390/

Cibulcova, V., Koenig, J., Jackowska, M., & Jandackova, V. K. (2024). Influence of a 2-week transcutaneous auricular vagus nerve stimulation on memory: findings from a randomized placebo controlled trial in non-clinical adults. Clinical Autonomic Research, 1-16. DOI: 10.1007/s10286-024-01053-0

VP8

Gottfriedová, N., Kovalová, M., Škerková, M., & Mrázková, E. (2024). Extended High-frequency Audiometry in the Elderly: A Narrative Review. J Int Adv Otol, 20(4), 358-364.

VP9

Karnati, M., Seal, A., Jaworek-Korjakowska, J., & Krejcar, O. (2023). Facial expression recognition in-the-wild using blended feature attention network. IEEE Transactions on Instrumentation and Measurement. https://doi.org/10.1109/TIM.2023.3314815

Pakniyat, N., Ramadoss, J., Karthikeyan, A., Marek, P., Krejcar, O., & Namazi, H. (2024). Complexity-based analysis of the variations in the brain response of porn-addicted and healthy individuals under different function tasks. Fractals. https://doi.org/10.1142/S0218348X24500907

Novak, M., Jecminek, V., Pleva, L., Penhaker, M., Schmidt, M., Mimra, T., Kubicek J. & Augustynek, M. (2024). Bioimpedance measurement: a non-invasive diagnosis of limb compartment syndrome. Frontiers in Bioengineering and Biotechnology, 12, 1433284. https://doi.org/10.3389/fbioe.2024.1433284

Oczka, D., Augustynek, M., Penhaker, M., & Kubicek, J. (2024). Electrogastrography measurement systems and analysis methods used in clinical practice and research: comprehensive review. Frontiers in Medicine, 11, 1369753. https://doi.org/10.3389/fmed.2024.1369753

Timkovič, J., Nowaková, J., Kubíček, J., Hasal, M., Varyšová, A., Kolarčík, L., Maršolková K., Augustynek M. & Snášel, V. (2024). Retinal Image Dataset of Infants and Retinopathy of Prematurity. Scientific Data, 11(1), 814. https://doi.org/10.1038/s41597-024-03409-7

Vivekanandhan, G., Karthikeyan, A., Pakniyat, N., Penhaker, M., Krejcar, O., & Namazi, H. (2024). ANALYSIS OF THE VARIATIONS IN BRAIN ACTIVITY IN RESPONSE TO VARIOUS COMPUTER GAMES. Fractals, 2450100. https://doi.org/10.1142/S0218348X24501007